PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 651aa    MW: 71500.4 Da    PI: 5.4743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12466511454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI +L
  PEQU_24356 466 NHVEAERMRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 511
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-5554238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.717462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-13465516No hitNo description
SuperFamilySSF474591.24E-18465530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-18466532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9466511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASTE LPGFPWTPTP MSLGNNPSSL AGATKPAYFT QDNLQQRLQM  60
LIEGGRENWT YAIFWQSSND AGSGAIILGW GDGYYKGSEE GKTKQKAKTA ASAAEQENRK  120
RVLRELNSLI SGGASGSSPE DAVEEEVTDT EWFFLVSMTQ SFINGHDLPG QAFLSGAPSW  180
FSGADRLAME SCERARQANN LGIRTMVYVP VGTGVLEFGS TEVIFHNAEI MNKVKALFVC  240
NGQESSAAAA LWLPPVVADQ IETDPSTIWI SDPSVIGIKD SVSPPTANIS PSKSPFPLHN  300
PSTSDLTESP NMIPINQPQQ NRHQPVNQQQ PFYSSKFSFS DITLNNAAPS QQFKPDSGNV  360
LNFGEIKRNS VSSAPSPQQQ IMEDKKTKRT AKVTTSLESN EQGMLSFSSA RPVSAEQEKV  420
SAAADSDHSD LDASVREAES SRVVEPEKKP RKRGRKPANG REEPLNHVEA ERMRREKLNQ  480
RFYALRAVVP NVSKMDKASL LGDAISYITE LRSKLQALES NNEQLQLQLE SIKEESDAGS  540
SRPLLPRIAA TVEHELKAMN GPLRSSGVEI EVKLLGVEAM IRIQCQRKNH PAARLMATLK  600
DLDLELYYAS VSVVKDLMIL QATVKMSSCG YTQEQLSSVL FSRVAEPLPR H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-60492414195Transcription factor MYC3
4rqw_B7e-60492414195Transcription factor MYC3
4rs9_A7e-60492414195Transcription factor MYC3
4yz6_A7e-60492414195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455KKPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919958.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0G2RLM20.0A0A0G2RLM2_9ASPA; MYC transcription factor
STRINGGRMZM2G001930_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-136bHLH family protein